STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0188PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3672 ABC sugar transporter, inner membrane subunit. (277 aa)    
Predicted Functional Partners:
Smed_0187
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3673 ABC sugar transporter, inner membrane subunit.
   0.967
Smed_0186
PFAM: extracellular solute-binding protein family 1; KEGG: rsp:RSP_3674 ABC sugar transporter, periplasmic binding protein.
 
   0.918
Smed_0190
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rsp:RSP_3670 putative oxidoreductase myo-inositol 2-dehydrogenase.
 
     0.892
Smed_0189
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rsp:RSP_3671 putative D-tagatose 3-epimerase.
 
  
 0.874
Smed_2455
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_2820 binding-protein-dependent transport systems inner membrane component.
   0.857
Smed_2698
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_3619 ABC transporter, permease protein, putative.
   0.857
Smed_2314
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20232 putative suagr ABC transporter permease protein.
   0.856
Smed_1701
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpa:MAP1768c sugar ABC transporter, permease protein.
   0.855
Smed_2062
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120007 putative permease component of ABC transporter.
   0.855
Smed_2145
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL100264 putative permease component of ABC transporter.
   0.854
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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