STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0209PFAM: uncharacterised conserved protein UCP032146; KEGG: sme:SMc02308 hypothetical protein; Belongs to the UPF0262 family. (158 aa)    
Predicted Functional Partners:
Smed_0210
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sme:SMc02309 putative arsenate reductase protein.
     0.942
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
       0.785
Smed_0207
KEGG: sme:SMc02306 hypothetical protein.
 
     0.737
Smed_1497
PFAM: protein of unknown function DUF1476; KEGG: sme:SMc00496 hypothetical protein.
  
     0.654
Smed_2671
PFAM: protein of unknown function DUF465; KEGG: sme:SMc04000 hypothetical protein.
  
     0.631
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
 
     0.608
Smed_0525
PFAM: protein of unknown function DUF983; KEGG: sme:SMc00014 hypothetical/unknown transmembrane protein.
 
     0.599
Smed_3440
PFAM: protein of unknown function DUF448; KEGG: sme:SMc02913 hypothetical protein.
  
     0.584
Smed_2718
PFAM: N-formylglutamate amidohydrolase; KEGG: sme:SMc04043 hypothetical protein.
 
     0.578
Smed_0930
PFAM: protein of unknown function DUF983; KEGG: sme:SMc01366 hypothetical protein.
 
   
 0.555
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.