STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0251PFAM: protein of unknown function DUF1217; KEGG: sme:SMc03023 hypothetical protein. (259 aa)    
Predicted Functional Partners:
FlgB
Flagellar basal body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.971
fliE
PFAM: flagellar hook-basal body complex protein FliE; KEGG: sme:SMc03029 flagellar hook-basal body complex protein.
 
 
 0.971
Smed_0249
PFAM: surface presentation of antigens (SPOA) protein; KEGG: sme:SMc03021 flagellar motor switch transmembrane protein.
 
 
 0.959
Smed_0263
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.955
FlgC
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: sme:SMc03028 flagellar basal-body ROD protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.950
Smed_0286
KEGG: sme:SMc03071 hypothetical protein.
 
 
 0.945
Smed_0250
PFAM: MotA/TolQ/ExbB proton channel; KEGG: sme:SMc03022 chemotaxis (motility protein A) transmembrane.
 
  
 0.942
FlgK
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: sme:SMc03048 putative flagellar hook-associated protein.
 
  
 0.942
FlgA
SAF domain protein; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
 
  
 0.937
FlgE
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: sme:SMc03047 flagellar hook protein.
 
 
 0.921
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.