STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0296PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc03065 alpha-glucosides transport ATP-binding ABC transporter protein. (362 aa)    
Predicted Functional Partners:
Smed_0293
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03062 alpha-glucosides transport system permease ABC transporter protein.
 
  0.968
Smed_0294
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03063 alpha-glucosides transport system permease ABC transporter protein.
 
 0.968
Smed_0292
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc03061 alpha-glucosides-binding periplasmic ABC transporter protein.
  
  0.925
Smed_0295
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sme:SMc03064 probable alpha-glucosidase protein.
 
  
 0.783
Smed_2062
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120007 putative permease component of ABC transporter.
 
   0.760
Smed_2144
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL100265 putative permease component of ABC transporter.
 
 0.729
Smed_1701
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpa:MAP1768c sugar ABC transporter, permease protein.
 
   0.728
Smed_2063
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll0851 putative multiple sugar transport system permease protein.
 
   0.718
Smed_2455
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_2820 binding-protein-dependent transport systems inner membrane component.
 
   0.717
Smed_2697
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_3620 sugar ABC transporter permease protein, putative.
 
 0.699
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.