STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0323Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc00780 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
Smed_3156
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc04882 probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.620
Smed_1395
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_PB00016 probable transcriptional regulator protein, LysR family.
  
     0.547
Smed_0324
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: sme:SMc00781 putative malonic semialdehyde oxidative decarboxylase protein.
       0.544
Smed_1788
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc04163 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.528
Smed_2647
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc03975 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.514
Smed_0572
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc00037 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.493
Smed_2097
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4368 transcriptional regulator, LysR family.
  
     0.491
Smed_1770
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc04315 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.478
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.