STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0331PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00788 probable dipeptide transport system permease protein. (302 aa)    
Predicted Functional Partners:
Smed_0332
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00789 probable dipeptide transport ATP-binding ABC transporter protein.
 
 0.998
Smed_0333
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sme:SMc00790 probable dipeptide transport ATP-binding ABC transporter protein.
 
 0.993
Smed_0330
Nickel-transporting ATPase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00787 probable dipeptide transport system permease protein.
 
 0.992
Smed_0329
PFAM: extracellular solute-binding protein family 5; KEGG: sme:SMc00786 probable periplasmic dipeptide-binding protein.
 0.982
Smed_3304
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1472 putative dipeptide transport permease protein.
 
 0.969
Smed_2856
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sme:SMc03125 putative transport system ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily.
  
 0.889
Smed_2323
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01528 putative dipeptide transport ATP-binding ABC transporter protein.
  
 0.887
Smed_3303
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: dge:Dgeo_1341 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.
  
 0.881
Smed_2855
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sme:SMc03126 putative transport system ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily.
  
 0.853
Smed_2325
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01526 putative dipeptide transport system permease ABC transporter protein.
  
 0.851
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.