STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0339PFAM: 17 kDa surface antigen; KEGG: sme:SMc00795 hypothetical protein. (82 aa)    
Predicted Functional Partners:
tolB
Tol-Pal system beta propeller repeat TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.621
Smed_2888
PFAM: protein of unknown function DUF490; KEGG: sme:SMc03096 hypothetical signal peptide protein.
 
    0.602
Smed_0616
KEGG: sme:SMc00456 hypothetical protein.
  
     0.555
Smed_3053
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
 
 0.525
Smed_3087
Heme exporter protein D (CcmD); Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.515
Smed_3243
TIGRFAM: Double-strand break repair protein AddB; KEGG: sme:SMc02759 hypothetical protein.
 
     0.468
Smed_0813
KEGG: sme:SMc01767 hypothetical protein.
  
     0.451
Smed_3190
PFAM: Heparinase II/III family protein; KEGG: sme:SMc04089 hypothetical protein.
  
     0.447
Smed_1171
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: sme:SMc02060 lipoprotein precursor.
  
 
 0.439
Smed_2628
KEGG: sme:SMc03956 hypothetical signal peptide protein.
 
 
 0.427
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.