STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0362KEGG: pde:Pden_3074 putative tricarboxylic transport membrane protein. (157 aa)    
Predicted Functional Partners:
Smed_0363
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pde:Pden_3073 protein of unknown function DUF112, transmembrane.
 
  
 0.968
Smed_0361
PFAM: Uncharacterized protein UPF0065; KEGG: pde:Pden_3075 uncharacterized protein UPF0065.
 
  
 0.951
Smed_0364
PFAM: GntR domain protein; KEGG: pde:Pden_3072 transcriptional regulator, GntR family.
 
     0.737
Smed_2529
KEGG: sme:SMc00732 hypothetical protein.
  
     0.540
Smed_1995
PFAM: putative ammonia monooxygenase; KEGG: sme:SMc01415 putative transmembrane protein.
  
    0.490
Smed_1074
KEGG: pfa:PF13_0056 hypothetical protein.
  
     0.418
Smed_1628
KEGG: rle:RL1144 hypothetical protein.
  
     0.416
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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