STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0366Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMa1632 putative LysR-family transcriptional regulator. (298 aa)    
Predicted Functional Partners:
Smed_0367
KEGG: sme:SMa1630 hypothetical protein.
 
     0.750
Smed_0368
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: sme:SMa1629 short chain dehydrogenase.
 
     0.740
Smed_0382
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc00818 putative hydrogen peroxide-inducible genes activator (morphology and auto-aggregation control protein); Belongs to the LysR transcriptional regulatory family.
  
     0.560
Smed_2647
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc03975 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.542
Smed_2432
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMb20715 putative transcriptional regulator, LysR family protein.
  
     0.497
Smed_0384
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc00820 putative transcriptional regulator protein.
  
     0.476
Smed_1788
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc04163 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.452
Smed_2441
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc02030 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.438
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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