STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0675PFAM: protein of unknown function DUF88; KEGG: sme:SMc02407 hypothetical protein. (193 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.666
Smed_0767
PFAM: DNA polymerase III chi subunit HolC; KEGG: sme:SMc00586 putative DNA polymerase III chi subunit.
  
     0.538
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: sme:SMc00366 probable phenylalanyl-tRNA synthetase beta chain protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.467
Smed_2551
PFAM: Methyltransferase type 11; KEGG: sme:SMc00709 hypothetical protein.
 
     0.462
Smed_0814
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: sme:SMc01768 putative transcription regulator protein.
  
     0.403
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.