node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Smed_0770 | rplC | Smed_0770 | Smed_0986 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.708 |
Smed_0770 | rplD | Smed_0770 | Smed_0987 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.719 |
Smed_0770 | rplM | Smed_0770 | Smed_0862 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.703 |
Smed_0770 | rplT | Smed_0770 | Smed_3485 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.701 |
Smed_0770 | rplU | Smed_0770 | Smed_3005 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.705 |
Smed_0770 | rpsC | Smed_0770 | Smed_0992 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.701 |
Smed_0770 | rpsG | Smed_0770 | Smed_0982 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.701 |
Smed_0770 | rpsI | Smed_0770 | Smed_0861 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | PFAM: ribosomal protein S9; KEGG: sme:SMc01803 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.731 |
Smed_0770 | rpsO | Smed_0770 | Smed_3445 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.703 |
Smed_0770 | rpsP | Smed_0770 | Smed_3097 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | PFAM: ribosomal protein S16; KEGG: sme:SMc03859 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.725 |
rplC | Smed_0770 | Smed_0986 | Smed_0770 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. | 0.708 |
rplC | rplD | Smed_0986 | Smed_0987 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.999 |
rplC | rplM | Smed_0986 | Smed_0862 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
rplC | rplT | Smed_0986 | Smed_3485 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.994 |
rplC | rplU | Smed_0986 | Smed_3005 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.994 |
rplC | rpsC | Smed_0986 | Smed_0992 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.998 |
rplC | rpsG | Smed_0986 | Smed_0982 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.996 |
rplC | rpsI | Smed_0986 | Smed_0861 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | PFAM: ribosomal protein S9; KEGG: sme:SMc01803 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.996 |
rplC | rpsO | Smed_0986 | Smed_3445 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.995 |
rplC | rpsP | Smed_0986 | Smed_3097 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | PFAM: ribosomal protein S16; KEGG: sme:SMc03859 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.995 |