STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0809KEGG: sme:SMc01763 hypothetical protein. (300 aa)    
Predicted Functional Partners:
bpt
Arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
       0.789
Smed_0386
KEGG: sme:SMc00824 hypothetical protein.
  
     0.554
Smed_0811
PFAM: RDD domain containing protein; KEGG: sme:SMc01765 hypothetical protein.
       0.547
Smed_0692
KEGG: sme:SMc02637 hypothetical protein.
  
     0.499
Smed_1451
Peptidase M15A; PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: sme:SMc00291 hypothetical lipoprotein.
  
     0.476
Smed_0485
PFAM: glycoside hydrolase family 25; KEGG: sme:SMc00980 hypothetical protein.
  
     0.436
Smed_0691
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: sme:SMc02638 hypothetical protein.
  
     0.436
Smed_2303
KEGG: sme:SMc02734 hypothetical protein.
  
     0.423
Smed_0314
PFAM: AsmA family protein; KEGG: sme:SMc00838 hypothetical protein.
  
     0.418
Smed_1535
PFAM: protein of unknown function DUF922; KEGG: sme:SMc00194 hypothetical protein.
  
     0.409
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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