STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0883TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bja:bll6292 probable Hemolysin secretion protein D. (491 aa)    
Predicted Functional Partners:
Smed_0884
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: xft:PD1412 toxin secretion ABC transporter ATP-binding protein.
 
 0.994
Smed_1149
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sme:SMc02082 putative outer membrane secretion protein.
 
 
 0.882
Smed_0885
Hypothetical protein; KEGG: sil:SPO3673 type I secretion target repeat protein.
 
  
 0.719
Smed_0886
KEGG: sha:SH0326 hypothetical protein.
  
  
 0.636
Smed_1354
KEGG: sme:SMc01182 hypothetical protein.
 
  
 0.520
Smed_1796
PFAM: Hemolysin-type calcium-binding region; KEGG: sme:SMc04171 putative hemolysin-type calcium-binding protein.
 
  
 0.501
Smed_0887
Hypothetical protein.
       0.443
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.