STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0948PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: sme:SMc01348 NADH-ubiquinone oxidoreductase. (131 aa)    
Predicted Functional Partners:
Smed_0949
KEGG: sme:SMc01347 hypothetical protein.
 
     0.788
Smed_1447
PFAM: ETC complex I subunit conserved region; KEGG: sme:SMc00287 putative oxidoreductase protein.
  
    0.773
Smed_2027
PFAM: protein of unknown function DUF1321; KEGG: sme:SMc01450 hypothetical protein.
 
   
 0.596
Smed_0126
PFAM: GcrA cell cycle regulator; KEGG: sme:SMc02139 hypothetical protein.
  
   
 0.557
Smed_2424
PFAM: cytochrome c class I; KEGG: sme:SMc01981 putative cytochrome c transmembrane protein.
  
     0.554
Smed_2511
KEGG: sme:SMc02445 hypothetical protein.
  
     0.517
gatB
glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
       0.511
Smed_0947
PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMc01349 hypothetical protein.
       0.511
Smed_2608
KEGG: sme:SMc00652 hypothetical protein.
  
     0.505
Smed_3426
PFAM: cytochrome c class I; KEGG: sme:SMc02897 putative cytochrome c transmembrane protein.
  
     0.499
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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