STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1041KEGG: sme:SMc00997 hypothetical protein. (242 aa)    
Predicted Functional Partners:
Smed_2030
KEGG: sme:SMc01454 hypothetical protein.
  
     0.760
Smed_1538
PFAM: chemotaxis sensory transducer; KEGG: sme:SMc00190 hypothetical protein.
  
     0.732
Smed_0249
PFAM: surface presentation of antigens (SPOA) protein; KEGG: sme:SMc03021 flagellar motor switch transmembrane protein.
  
     0.730
Smed_3347
PFAM: TadE family protein; KEGG: sme:SMc04117 hypothetical protein.
  
     0.728
Smed_0244
PFAM: regulatory protein LuxR; KEGG: sme:SMc03016 putative transcription regulator protein.
  
     0.712
Smed_3346
KEGG: sme:SMc04118 hypothetical protein.
  
     0.708
Smed_3353
TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: sme:SMc04110 pilus assembly protein cpaD.
  
     0.696
Smed_1537
PFAM: Hpt domain protein; KEGG: sme:SMc00191 hypothetical protein.
  
     0.695
Smed_0616
KEGG: sme:SMc00456 hypothetical protein.
  
     0.689
Smed_0668
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.684
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.