STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1042PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: sme:SMc00998 conserved hypothetical signal peptide protein. (202 aa)    
Predicted Functional Partners:
Smed_2604
KEGG: sme:SMc00655 hypothetical protein.
  
     0.772
Smed_1111
KEGG: sme:SMc02115 hypothetical unknown protein.
  
     0.771
Smed_0517
PFAM: Invasion associated locus B family protein; KEGG: sme:SMc00071 hypothetical protein.
  
     0.759
Smed_1055
KEGG: sme:SMc01011 hypothetical protein.
  
     0.758
Smed_2677
PFAM: protein of unknown function DUF1036; KEGG: sme:SMc04006 hypothetical protein.
  
     0.732
Smed_0537
KEGG: sme:SMc00020 hypothetical protein.
  
     0.721
Smed_0533
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: sme:SMc00074 hypothetical transmembrane signal peptide protein.
 
 
 
 0.716
Smed_2609
PFAM: uncharacterised conserved protein UCP033924; KEGG: sme:SMc00651 hypothetical protein.
  
     0.706
Smed_0709
KEGG: sme:SMc02555 conserved hypothetical signal peptide protein.
  
     0.691
Smed_2709
PFAM: protein of unknown function DUF459; KEGG: sme:SMc04025 hypothetical protein.
  
     0.683
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.