STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1124PFAM: Domain of unknown function DUF1849; KEGG: sme:SMc02102 hypothetical protein. (272 aa)    
Predicted Functional Partners:
Smed_2539
KEGG: sme:SMc00722 hypothetical protein.
  
     0.756
Smed_0158
KEGG: sme:SMc02242 hypothetical protein.
  
     0.672
Smed_2276
PFAM: protein of unknown function DUF58; KEGG: sme:SMc02704 hypothetical protein.
  
     0.659
Smed_2277
TIGRFAM: conserved hypothetical membrane protein; KEGG: sme:SMc02705 hypothetical protein.
  
     0.646
Smed_2278
KEGG: sme:SMc02706 hypothetical protein.
  
     0.602
Smed_1123
PFAM: Endoribonuclease L-PSP; KEGG: sme:SMc02103 hypothetical protein.
       0.584
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.576
Smed_2969
PFAM: HemY domain protein; KEGG: sme:SMc03234 hypothetical protein.
  
     0.573
Smed_1121
PFAM: protein of unknown function DUF482; KEGG: sme:SMc02105 hypothetical protein.
       0.572
Smed_1122
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sme:SMc02104 conserved hypothetical protein.
       0.572
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.