STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1130PFAM: sulfatase; KEGG: aor:AO090012000003 beta-glucosidase-related glycosidases Pfam: Sulfatase Glyco_hydro_3 Glyco_hydro_3_C FG-GAP. (537 aa)    
Predicted Functional Partners:
Smed_1129
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bmb:BruAb2_1122 taurine ABC transporter, taurine-binding protein.
 
    0.756
Smed_1128
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bms:BRA1187 taurine ABC transporter, ATP-binding protein.
 
    0.694
Smed_1127
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bmb:BruAb2_1124 taurine ABC transporter, permease protein.
 
    0.670
Smed_1126
PFAM: ROK family protein; KEGG: bmb:BruAb2_1125 ROK family protein.
  
  
 0.622
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
    0.564
Smed_0197
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sme:SMc02273 fatty acid synthase transmembrane protein.
 
 
 0.515
rpsB
PFAM: ribosomal protein S2; KEGG: sme:SMc02101 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
       0.446
Smed_3153
PFAM: amidohydrolase 2; KEGG: pol:Bpro_2213 amidohydrolase 2.
  
     0.440
Smed_1724
Beta-mannosidase; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sme:SMc04255 putative beta-mannosidase protein.
 
 
 0.438
Smed_1237
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sme:SMa1680 hypothetical protein.
 
     0.434
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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