STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1249PFAM: regulatory protein AsnC/Lrp family; KEGG: sme:SMc01223 putative transcription regulator protein. (156 aa)    
Predicted Functional Partners:
Smed_2919
Putative transcriptional regulator, AsnC family; PFAM: regulatory protein AsnC/Lrp family; Helix-turn-helix type 11 domain protein; KEGG: sme:SMc02504 putative transcription regulator protein.
  
     0.723
Smed_1250
PFAM: glycosyl transferase family 2; KEGG: sme:SMc01222 putative lipopolysaccharide core biosynthesis glycosyl transferase protein.
       0.537
Smed_1252
Phosphatidylserine decarboxylase; PFAM: glycosyl transferase group 1; KEGG: sme:SMc01220 putative lipopolysaccharide core biosynthesis glycosyl transferase protein.
       0.502
Smed_1251
Phosphatidylserine decarboxylase; PFAM: glycosyl transferase group 1; KEGG: sme:SMc01221 putative lipopolysaccharide core biosynthesis glycosyl transferase protein.
       0.499
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.