STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1391PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH02680 probable ferrichrome ABC transporter, ATP-binding protein. (259 aa)    
Predicted Functional Partners:
Smed_1392
PFAM: transport system permease protein; KEGG: ret:RHE_CH02681 probable ferrichrome ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.988
Smed_1393
PFAM: transport system permease protein; KEGG: ret:RHE_CH02682 probable ferrichrome ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.987
Smed_1394
PFAM: periplasmic binding protein; KEGG: ret:RHE_CH02683 probable ferrichrome ABC transporter, substrate-binding protein.
 
  
 0.952
Smed_2492
PFAM: transport system permease protein; KEGG: atc:AGR_L_2296 iron(III) dicitrate transport system permease protein FecC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.949
Smed_2493
PFAM: transport system permease protein; KEGG: atc:AGR_L_2295 iron(III) dicitrate transport system permease protein FecD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.948
Smed_2340
PFAM: transport system permease protein; KEGG: sme:SMc01511 putative hemin transport system permease transmembrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.945
Smed_2491
PFAM: periplasmic binding protein; KEGG: atu:Atu3688 ABC transporter, membrane spanning protein [iron(III) dicitrate].
 
 
 0.941
Smed_2194
PFAM: periplasmic binding protein; KEGG: sme:SMc01659 putative transport transmembrane protein.
 
 
 0.870
Smed_2339
PFAM: periplasmic binding protein; KEGG: sme:SMc01512 putative hemin binding periplasmic transmembrane protein.
 
 
 0.659
Smed_2495
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: atc:AGR_L_2303 hypothetical protein.
 
  
 0.493
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.