STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1463FeS assembly scaffold SufA; TIGRFAM: iron-sulfur cluster assembly accessory protein; FeS assembly scaffold SufA; PFAM: HesB/YadR/YfhF-family protein; KEGG: sme:SMc00301 hypothetical protein; Belongs to the HesB/IscA family. (130 aa)    
Predicted Functional Partners:
Smed_1469
PFAM: aminotransferase class V; KEGG: sme:SMc00529 putative pyridoxal-phosphate-dependent aminotransferase protein.
 
  
 0.917
Smed_1050
PFAM: nitrogen-fixing NifU domain protein; KEGG: sme:SMc01006 hypothetical protein.
  
  
 0.898
Smed_1468
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sme:SMc00530 hypothetical protein.
  
 
 0.888
Smed_1467
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00531 putative ABC transporter ATP-binding protein.
  
 
 0.841
Smed_1536
PFAM: ferredoxin; KEGG: sme:SMc00192 probable ferredoxin, 2FE-2S FdiI electron transport iron-sulfur protein.
 
 
 0.836
Smed_1466
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: sme:SMc00532 hypothetical protein.
  
 
 0.822
Smed_0191
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sme:SMc02267 hypothetical protein.
 
  
 0.790
Smed_2105
PFAM: heat shock protein DnaJ domain protein; KEGG: sme:SMc01853 DnaJ-like protein.
  
 
 0.728
Smed_0036
Scaffold protein Nfu/NifU; PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: sme:SMc01119 hypothetical protein.
 
 
 0.715
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.708
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.