STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1465TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sme:SMc00533 putative pyridoxal-phosphate-dependent aminotransferase protein; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (413 aa)    
Predicted Functional Partners:
Smed_0615
PFAM: Fe-S metabolism associated SufE; KEGG: sme:SMc00118 conserved hypothetical protein.
 
 0.983
Smed_1466
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: sme:SMc00532 hypothetical protein.
 
 
 0.981
Smed_1467
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00531 putative ABC transporter ATP-binding protein.
 
  
 0.980
Smed_1468
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sme:SMc00530 hypothetical protein.
 
 
 0.962
Smed_1464
TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: sme:SMc00302 hypothetical protein.
 
  
 0.923
Smed_1248
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMc01224 probable thioredoxin reductase protein.
 
 
 0.920
Smed_1050
PFAM: nitrogen-fixing NifU domain protein; KEGG: sme:SMc01006 hypothetical protein.
  
 
 0.918
Smed_0870
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sme:SMc01813 hypothetical protein.
    
   0.689
Smed_1463
FeS assembly scaffold SufA; TIGRFAM: iron-sulfur cluster assembly accessory protein; FeS assembly scaffold SufA; PFAM: HesB/YadR/YfhF-family protein; KEGG: sme:SMc00301 hypothetical protein; Belongs to the HesB/IscA family.
  
 
 0.668
Smed_0197
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sme:SMc02273 fatty acid synthase transmembrane protein.
  
 
 0.492
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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