STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1469PFAM: aminotransferase class V; KEGG: sme:SMc00529 putative pyridoxal-phosphate-dependent aminotransferase protein. (402 aa)    
Predicted Functional Partners:
Smed_1050
PFAM: nitrogen-fixing NifU domain protein; KEGG: sme:SMc01006 hypothetical protein.
  
 0.999
Smed_2570
PFAM: SirA family protein; KEGG: sme:SMc00688 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 0.988
Smed_3396
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sme:SMc02864 putative thiamine biosynthesis transmembrane protein.
 
 
 0.924
Smed_0191
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sme:SMc02267 hypothetical protein.
 
  
 0.923
Smed_1365
PFAM: Rhodanese domain protein; KEGG: sme:SMc01172 putative thiosulfate sulfurtransferase protein.
  
 0.922
Smed_1463
FeS assembly scaffold SufA; TIGRFAM: iron-sulfur cluster assembly accessory protein; FeS assembly scaffold SufA; PFAM: HesB/YadR/YfhF-family protein; KEGG: sme:SMc00301 hypothetical protein; Belongs to the HesB/IscA family.
 
  
 0.917
Smed_1536
PFAM: ferredoxin; KEGG: sme:SMc00192 probable ferredoxin, 2FE-2S FdiI electron transport iron-sulfur protein.
 
 0.901
Smed_0036
Scaffold protein Nfu/NifU; PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: sme:SMc01119 hypothetical protein.
 
 
 0.827
Smed_2105
PFAM: heat shock protein DnaJ domain protein; KEGG: sme:SMc01853 DnaJ-like protein.
  
 
 0.795
Smed_0197
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sme:SMc02273 fatty acid synthase transmembrane protein.
  
 
 0.791
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.