STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1633PFAM: Necrosis inducing; KEGG: bld:BLi01595 hypothetical protein. (238 aa)    
Predicted Functional Partners:
Smed_0564
PFAM: sulfatase; KEGG: sme:SMc00127 choline sulfatase protein.
  
     0.591
Smed_3146
PFAM: sulfatase; KEGG: ppu:PP_0077 choline sulfatase.
  
     0.514
Smed_1098
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sme:SMc01052 hypothetical protein.
  
     0.452
Smed_1710
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: sme:SMc04247 putative beta-xylosidase protein; Belongs to the glycosyl hydrolase 43 family.
  
     0.440
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: sme:SMc02804 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.428
Smed_0197
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sme:SMc02273 fatty acid synthase transmembrane protein.
 
   
 0.403
tam
Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.
  
     0.402
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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