STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1637Hypothetical protein. (112 aa)    
Predicted Functional Partners:
Smed_1641
KEGG: rsp:RSP_2990 hypothetical protein.
  
    0.790
Smed_1638
KEGG: psp:PSPPH_2395 hypothetical protein.
  
    0.789
Smed_1639
KEGG: pae:PA0643 hypothetical protein.
       0.783
Smed_1642
KEGG: aba:Acid345_3157 hypothetical protein.
       0.767
Smed_1640
Hypothetical protein.
       0.764
Smed_1334
TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein HK97; KEGG: mes:Meso_1895 phage major capsid protein, HK97 family.
   
 
 0.435
Smed_1636
KEGG: sme:SMc04183 putative transmembrane protein.
       0.424
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.