STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1664KEGG: atc:AGR_C_796 hypothetical protein. (417 aa)    
Predicted Functional Partners:
Smed_1663
PFAM: transcription antitermination protein NusG; KEGG: atc:AGR_C_797 transcription antitermination protein NusG.
       0.781
Smed_1665
PFAM: protein of unknown function DUF982; KEGG: sme:SMb21471 hypothetical protein.
       0.541
Smed_1654
PFAM: phage major capsid protein E; KEGG: hch:HCH_02898 type II secretory pathway, pullulanase PulA and related glycosidase.
 
     0.463
Smed_0886
KEGG: sha:SH0326 hypothetical protein.
  
     0.461
Smed_1662
KEGG: xfa:XF0515 hypothetical protein.
       0.451
Smed_1658
TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein lambda; KEGG: gox:GOX2339 bacteriophage capsid structural protein.
 
   
 0.440
Smed_1660
PFAM: phage terminase GpA; KEGG: mca:MCA2658 prophage LambdaMc01, terminase, large subunit.
 
    0.412
Smed_1655
KEGG: gox:GOX2342 hypothetical protein.
 
    0.410
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.