STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1678KEGG: mlo:mlr8516 hypothetical protein. (179 aa)    
Predicted Functional Partners:
Smed_1677
KEGG: pde:Pden_0257 hypothetical protein.
       0.773
Smed_1679
Hypothetical protein; KEGG: mkm:Mkms_2959 HNH endonuclease.
       0.773
Smed_1680
KEGG: bam:Bamb_2416 hypothetical protein.
       0.773
Smed_1676
Hypothetical protein.
       0.460
Smed_1675
Hypothetical protein.
       0.452
Smed_1681
PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: sme:SMa1727 putative hydrolase.
       0.442
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.