STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1842KEGG: sme:SMc04190 conserved hypothetical signal peptide protein. (150 aa)    
Predicted Functional Partners:
Smed_0591
Gluconate 2-dehydrogenase (acceptor); KEGG: sme:SMc00086 putative diheme cytochrome c-type signal peptide protein.
  
 
 0.869
Smed_2727
KEGG: sme:SMc04048 putative cytochrome c protein.
  
 
 0.869
Smed_2987
KEGG: bja:bll7663 hypothetical protein.
  
 
 0.851
Smed_1540
Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.723
Smed_1539
PFAM: cytochrome c1; KEGG: sme:SMc00189 ubiquinol-cytochrome c reductase cytochrome c1 subunit.
   
 
 0.604
Smed_1541
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.603
Smed_0007
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.595
Smed_0902
TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sme:SMc01926 NADH dehydrogenase I chain M.
   
    0.578
Smed_2424
PFAM: cytochrome c class I; KEGG: sme:SMc01981 putative cytochrome c transmembrane protein.
  
 
 0.497
Smed_3426
PFAM: cytochrome c class I; KEGG: sme:SMc02897 putative cytochrome c transmembrane protein.
  
 
 0.497
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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