STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1908PFAM: protein of unknown function DUF1064; KEGG: lin:lin0099 hypothetical protein. (126 aa)    
Predicted Functional Partners:
Smed_1911
KEGG: rpb:RPB_0521 hypothetical protein.
       0.779
Smed_1907
Hypothetical protein.
       0.773
Smed_1909
Hypothetical protein.
       0.773
Smed_1910
Hypothetical protein.
       0.773
Smed_1905
PFAM: GcrA cell cycle regulator.
       0.681
Smed_1904
KEGG: sme:SMb20548 hypothetical protein.
       0.678
Smed_1906
Hypothetical protein.
       0.675
Smed_1912
PFAM: protein of unknown function DUF982; KEGG: sme:SMb20546 hypothetical protein.
       0.547
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.