STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2100TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:alr4166 polar amino acid transport system permease protein. (376 aa)    
Predicted Functional Partners:
Smed_2101
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_3047 ABC transporter related.
 
 0.992
Smed_2099
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_05808 ABC-type amino acid transport system, permease component.
 
0.985
Smed_2098
PFAM: extracellular solute-binding protein family 3; KEGG: bja:bll2909 probable amino acid binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.979
Smed_2846
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc03135 putative amino-acid transport system ATP-binding ABC transporter protein.
 
 0.978
Smed_1105
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02121 probable general L-amino acid transport ATP-binding ABC transporter protein.
 
 0.977
Smed_2579
SMART: extracellular solute-binding protein family 3; KEGG: sme:SMc00676 putative amino acid-binding periplasmic signal peptide protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.952
Smed_1108
TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.
 
 0.949
Smed_1107
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein.
 
0.938
Smed_1106
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02120 probable general L-amino acid transport permease ABC transporter protein.
  
  
 
0.924
Smed_2981
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0795 amino acid ABC transporter, ATP-binding protein.
 
 
 0.893
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.