STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2120PFAM: protein of unknown function DUF6 transmembrane; KEGG: sme:SMc02817 hypothetical protein. (317 aa)    
Predicted Functional Partners:
Smed_2119
KEGG: sme:SMc02818 hypothetical protein.
       0.780
Smed_2847
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sme:SMc03134 hypothetical protein.
  
     0.748
Smed_2121
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sme:SMc04455 acetolactate synthase large subunit; Belongs to the TPP enzyme family.
  
    0.658
Smed_2118
KEGG: sme:SMc02819 putative ribonuclease protein; Belongs to the RNase T2 family.
       0.493
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.