STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2126PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc01576 putative oxidoreductase protein. (429 aa)    
Predicted Functional Partners:
Smed_2750
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; KEGG: sme:SMc03931 putative sarcosine oxidase alpha subunit transmembrane protein.
  
 
 0.793
Smed_3287
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: sme:SMc02606 putative sarcosine oxidase alpha subunit transmembrane protein.
  
 
 0.793
Smed_0302
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc00762 putative glutamine synthetase protein.
 
  
 0.554
Smed_2416
PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc01973 putative homologous to A glutamine synthetase protein.
 
  
 0.506
Smed_2125
PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sme:SMc01575 hypothetical protein.
       0.473
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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