STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2133Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sme:SMc01602 hypothetical protein. (292 aa)    
Predicted Functional Partners:
Smed_2132
PFAM: N-formylglutamate amidohydrolase; KEGG: sme:SMc01600 hypothetical protein.
 
  
 0.874
Smed_2130
PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc01594 probable glutamine synthetase.
 
    0.788
Smed_2128
PFAM: iron-containing alcohol dehydrogenase; KEGG: sme:SMc01582 putative alcohol dehydrogenase protein.
 
   
 0.776
Smed_2129
PFAM: aldehyde dehydrogenase; KEGG: sme:SMc01588 putative aldehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family.
 
    0.750
Smed_2134
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc01605 putative periplasmic binding ABC transporter protein.
       0.459
Smed_0502
PFAM: cobalt transport protein; KEGG: sme:SMc00963 hypothetical transmembrane protein.
  
    0.409
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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