STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2140TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sme:SMc01611 putative ferrichrome-iron receptor precursor protein. (740 aa)    
Predicted Functional Partners:
Smed_2296
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sme:SMc02726 putative iron transport protein.
 
  
 0.703
Smed_2139
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sme:SMc01610 putative transcription regulator protein.
 
   
 0.650
Smed_2335
TIGRFAM: TonB family protein; KEGG: sme:SMc01515 TonB protein.
 
 
 0.609
Smed_2194
PFAM: periplasmic binding protein; KEGG: sme:SMc01659 putative transport transmembrane protein.
 
   
 0.564
Smed_2490
KEGG: rso:RS05859 probable peptide synthetase protein.
  
  
 0.547
Smed_2628
KEGG: sme:SMc03956 hypothetical signal peptide protein.
  
 
 0.543
Smed_2141
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: bms:BR1062 proline dipeptidase.
     
 0.541
Smed_2193
PFAM: ferric iron reductase; KEGG: sme:SMc01658 putative transport protein.
 
  
 0.491
Smed_2496
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pde:Pden_4240 FAD-binding 9, siderophore-interacting domain protein.
 
  
 0.477
Smed_2494
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_2292 iron (III) dicitrate transport system (permease).
 
  
 0.448
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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