STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2161PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01625 putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (372 aa)    
Predicted Functional Partners:
Smed_2162
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01626 putative permease ABC transporter protein.
 
   0.932
Smed_2163
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01627 putative permease ABC transporter protein.
 
   0.926
Smed_0293
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03062 alpha-glucosides transport system permease ABC transporter protein.
  
  0.869
Smed_1727
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04258 putative transport system permease ABC transporter protein.
  
  0.869
Smed_2357
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01497 probable sorbitol/mannitol transport inner membrane transmembrane protein.
  
  0.869
Smed_2949
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02472 putative transport system permease ABC transporter protein.
  
  0.869
Smed_3169
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04395 putative transport system permease ABC transporter protein.
  
  0.869
Smed_3403
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02872 putative permease ABC transporter protein.
  
  0.869
Smed_0292
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc03061 alpha-glucosides-binding periplasmic ABC transporter protein.
  
  0.867
Smed_1728
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc04259 putative periplasmic binding ABC transporter signal peptide protein.
  
  0.867
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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