STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2182Putative transcriptional regulator; PFAM: helix-turn-helix domain protein; KEGG: sme:SMc01646 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Smed_2183
PFAM: extracellular solute-binding protein family 5; KEGG: sme:SMc01647 putative periplasmic binding protein.
 
     0.620
Smed_1931
Hypothetical protein; KEGG: mag:amb2709 integrase; Belongs to the 'phage' integrase family.
 
  
 0.605
Smed_0216
KEGG: sme:SMc02315 hypothetical unknown protein.
  
     0.582
Smed_0350
KEGG: sme:SMc00801 hypothetical protein.
  
     0.577
Smed_1641
KEGG: rsp:RSP_2990 hypothetical protein.
  
     0.561
Smed_1874
KEGG: rsp:RSP_2990 hypothetical protein.
  
     0.561
Smed_2184
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: sme:SMc01648 hypothetical protein.
 
     0.560
Smed_0215
HPr kinase; KEGG: sme:SMc02314 hypothetical protein.
  
     0.534
Smed_0687
KEGG: sme:SMc02642 hypothetical signal peptide protein.
  
     0.533
Smed_1560
PFAM: autoinducer synthesis protein; KEGG: sme:SMc00168 putative autoinducer synthase protein.
  
     0.533
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.