STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2220PFAM: protein of unknown function DUF1428; KEGG: sme:SMc01560 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Smed_2219
PFAM: protein of unknown function UPF0047; KEGG: sme:SMc01559 hypothetical protein.
       0.661
Smed_2221
KEGG: sme:SMc01561 putative transmembrane protein.
       0.511
Smed_0314
PFAM: AsmA family protein; KEGG: sme:SMc00838 hypothetical protein.
   
    0.472
Smed_2030
KEGG: sme:SMc01454 hypothetical protein.
   
    0.472
Smed_2218
PFAM: protein of unknown function DUF1486; KEGG: sme:SMc01558 hypothetical protein.
       0.466
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.