STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2337Hemin uptake protein-like protein; KEGG: sme:SMc01747 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Smed_2338
PFAM: Haemin-degrading family protein; KEGG: sme:SMc01513 putative hemin transport protein.
  
  
 0.829
Smed_2336
KEGG: sme:SMc01514 hypothetical protein.
       0.565
Smed_2339
PFAM: periplasmic binding protein; KEGG: sme:SMc01512 putative hemin binding periplasmic transmembrane protein.
     
 0.556
hmuV
ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
       0.544
Smed_2340
PFAM: transport system permease protein; KEGG: sme:SMc01511 putative hemin transport system permease transmembrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.521
Smed_2335
TIGRFAM: TonB family protein; KEGG: sme:SMc01515 TonB protein.
  
  
 0.498
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.