STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2350Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:pRL120548 putative LysR family transcriptional regulator. (298 aa)    
Predicted Functional Partners:
Smed_2349
KEGG: rle:pRL120547 putative MFS family transporter protein.
 
    0.747
Smed_2348
KEGG: sus:Acid_3306 hypothetical protein.
       0.546
Smed_2097
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4368 transcriptional regulator, LysR family.
  
     0.540
Smed_1788
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc04163 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.438
Smed_0384
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc00820 putative transcriptional regulator protein.
  
     0.417
Smed_0382
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc00818 putative hydrogen peroxide-inducible genes activator (morphology and auto-aggregation control protein); Belongs to the LysR transcriptional regulatory family.
  
     0.407
Smed_2432
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMb20715 putative transcriptional regulator, LysR family protein.
  
     0.401
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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