STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2406PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01963 putative spermidine/putrescine transport system permease ABC transporter protein. (266 aa)    
Predicted Functional Partners:
Smed_2407
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01964 putative spermidine/putrescine transport system permease ABC transporter protein.
  
 0.969
Smed_2408
TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc01965 putative spermidine/putrescine transport ATP-binding ABC transporter protein.
 
  
 0.953
Smed_2409
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc01966 putative spermidine/putrescine-binding periplasmic ABC transporter protein.
 
  
 0.915
Smed_0756
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7677 ABC transporter, permease protein.
  
 0.868
Smed_2169
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01633 putative permease ABC transporter protein.
  
 0.854
Smed_2405
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sme:SMc01962 hypothetical protein.
 
     0.831
Smed_0312
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00772 probable putrescine transport system permease protein.
  
 0.824
Smed_2168
KEGG: sme:SMc01632 putative periplasmic binding ABC transporter protein.
  
 0.797
Smed_1717
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BRA0328 spermidine/putrescine ABC transporter, permease protein, putative.
  
 0.795
fbpC
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
  
 0.779
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.