STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2412Aminotransferase class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: sme:SMc01969 hypothetical protein. (392 aa)    
Predicted Functional Partners:
Smed_2411
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc01968 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
    0.664
Smed_2409
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc01966 putative spermidine/putrescine-binding periplasmic ABC transporter protein.
 
    0.534
Smed_2711
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sme:SMc04028 probable glutamate synthase NADPH large chain protein.
  
  
 0.529
Smed_2410
TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sme:SMc01967 putative agmatinase protein; Belongs to the arginase family.
 
  
 0.518
Smed_3499
PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sme:SMc00379 putative oxidoreductase protein.
   
    0.505
Smed_0197
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sme:SMc02273 fatty acid synthase transmembrane protein.
  
 
 0.485
Smed_0587
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
 
   0.426
Smed_2405
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sme:SMc01962 hypothetical protein.
 
  
 0.424
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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