STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2434KEGG: jan:Jann_2415 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Smed_2433
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: rsp:RSP_1486 regulatory protein, TetR family.
 
     0.908
Smed_3503
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: eli:ELI_09040 hypothetical protein.
  
     0.703
Smed_0691
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: sme:SMc02638 hypothetical protein.
 
     0.567
Smed_2303
KEGG: sme:SMc02734 hypothetical protein.
  
     0.496
Smed_2793
PFAM: peptidase S41; KEGG: ctc:CTC01801 hypothetical protein.
  
     0.490
Smed_3460
KEGG: sme:SMc00337 hypothetical/unknown protein.
  
     0.486
Smed_2300
KEGG: sme:SMc02730 hypothetical protein.
  
     0.472
Smed_2431
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sme:SMb20716 hypothetical protein.
 
     0.472
Smed_2304
KEGG: sme:SMc02735 hypothetical protein.
  
     0.470
Smed_2310
KEGG: sme:SMc01535 hypothetical protein.
  
     0.461
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.