STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2453Hypothetical protein. (80 aa)    
Predicted Functional Partners:
Smed_2447
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ter:Tery_0562 alcohol dehydrogenase, zinc-binding.
       0.773
Smed_2448
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mes:Meso_3153 short-chain dehydrogenase/reductase SDR.
       0.773
Smed_2449
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mes:Meso_3152 cupin 2, conserved barrel.
       0.773
Smed_2450
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: vei:Veis_0884 glucose-methanol-choline oxidoreductase.
       0.773
Smed_2451
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mlo:mll7151 sugar ABC transporter, ATP-binding protein.
       0.773
Smed_2452
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pfu:PF1933 putative sugar transport ATP-hydrolyzing.
       0.773
Smed_2454
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2612 binding-protein-dependent transport systems inner membrane component.
       0.773
Smed_2455
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_2820 binding-protein-dependent transport systems inner membrane component.
       0.768
Smed_2446
PFAM: aldehyde dehydrogenase; KEGG: mpt:Mpe_A0361 lactaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.685
Smed_2445
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMc02034 putative oxidoreductase protein.
       0.565
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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