STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgiAPFAM: glucose-6-phosphate isomerase; KEGG: sme:SMc02042 glucose-6-phosphate isomerase; Belongs to the archaeal-type GPI family. (214 aa)    
Predicted Functional Partners:
Smed_2464
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: sme:SMc02043 probable KHG/KDPG aldolase (includes: 4-hydroxy-2-oxoglutarate aldolase, 2-dehydro-3-deoxyphosphogluconate aldolase) protein.
    
  0.954
Smed_2465
KEGG: sme:SMc02044 hypothetical protein.
 
     0.952
Smed_2467
KEGG: sme:SMc02332 hypothetical protein.
 
     0.917
Smed_3129
PFAM: Transketolase central region; Transketolase domain protein; KEGG: ret:RHE_CH02397 transketolase C-terminal subunit protein.
  
  
  0.911
Smed_2873
PFAM: ROK family protein; KEGG: sme:SMc03109 hypothetical protein.
    
 0.906
Smed_2479
TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: sme:SMc02342 transketolase; Belongs to the transketolase family.
    
  0.904
Smed_2650
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
    
  0.904
Smed_0108
PFAM: PfkB domain protein; KEGG: sme:SMc02164 probable fructokinase protein.
   
 
 0.903
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
    
  0.902
Smed_3409
Glutamine--fructose-6-phosphate transaminase (isomerizing); PFAM: sugar isomerase (SIS); KEGG: sme:SMc02877 putative glucosamine-6-phosphate isomerase.
   
 
  0.902
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.