STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2465KEGG: sme:SMc02044 hypothetical protein. (317 aa)    
Predicted Functional Partners:
pgiA
PFAM: glucose-6-phosphate isomerase; KEGG: sme:SMc02042 glucose-6-phosphate isomerase; Belongs to the archaeal-type GPI family.
 
     0.952
Smed_2467
KEGG: sme:SMc02332 hypothetical protein.
 
     0.914
Smed_2466
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sme:SMc02045 putative oxidoreductase protein.
 
  
 0.883
Smed_2471
PFAM: carbohydrate kinase FGGY; KEGG: sme:SMc02335 putative pentose kinase protein.
 
   
 0.799
Smed_2464
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: sme:SMc02043 probable KHG/KDPG aldolase (includes: 4-hydroxy-2-oxoglutarate aldolase, 2-dehydro-3-deoxyphosphogluconate aldolase) protein.
  
    0.789
Smed_2468
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sme:SMc02460 hypothetical protein.
 
     0.785
Smed_2461
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMc02039 putative oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.682
Smed_2462
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMc02041 putative oxidoreductase protein.
  
  
 0.678
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.653
Smed_2295
Anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; anthranilate synthase; PFAM: glutamine amidotransferase class-I; Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: sme:SMc02725 anthranilate synthase includes: glutamine amidotransferase protein.
  
 
 0.634
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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