STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2522PFAM: AMP-dependent synthetase and ligase; KEGG: sme:SMc00741 putative fatty-acid-CoA ligase protein. (547 aa)    
Predicted Functional Partners:
GltA
TIGRFAM: citrate synthase I; PFAM: Citrate synthase; KEGG: sme:SMc02087 citrate synthase; Belongs to the citrate synthase family.
  
 0.966
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
   
 0.952
Smed_1439
Propanoyl-CoA C-acyltransferase; PFAM: Thiolase; KEGG: sme:SMc00262 putative 3-ketoacyl-CoA thiolase protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.945
Smed_0144
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: sme:SMc02227 putative fatty oxidation complex alpha subunit includes: enoyl-CoA hydratase, 3-hydroxyacyl-CoA dehydrogenase, 3-hydroxybutyryl-CoA epimerase transmembrane protein.
  
 0.933
Smed_0145
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: sme:SMc02228 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.932
Smed_0499
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: sme:SMc00966 putative acetyl-CoA acyltransferase protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.932
Smed_3117
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: sme:SMc03879 acetyl-CoA acetyltransferase protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.932
Smed_0324
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: sme:SMc00781 putative malonic semialdehyde oxidative decarboxylase protein.
  
 0.930
Smed_2260
PFAM: aldehyde dehydrogenase; KEGG: sme:SMc02689 probable aldehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family.
  
 0.930
Smed_2414
PFAM: aldehyde dehydrogenase; KEGG: sme:SMc01971 putative aldehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family.
  
 0.930
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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