STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2701PFAM: 3-dehydroquinate synthase; KEGG: ret:RHE_PA00022 putative glycerol 1-phosphate dehydrogenase protein (L-arabinose utilization protein) protein. (451 aa)    
Predicted Functional Partners:
GlpD
PFAM: FAD dependent oxidoreductase; KEGG: rpa:RPA4410 glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.978
Smed_2692
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: ret:RHE_PA00028 putative glycerol-3-phosphate dehydrogenase (NAD(P)+) protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.925
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: sme:SMc03229 probable glycerol-3-phosphate dehydrogenase protein.
    
 0.910
GlpD-2
PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc02520 putative glycerol-3-phosphate dehydrogenase protein; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.907
Smed_2700
TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; KEGG: ret:RHE_PA00023 putative hydrolase protein.
 
     0.848
Smed_2696
PFAM: extracellular solute-binding protein family 1; KEGG: rde:RD1_3621 ABC transporter, substrate-binding protein, putative.
 
  
 0.832
Smed_1602
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
     
  0.800
Smed_2546
PFAM: phospholipid/glycerol acyltransferase; KEGG: sme:SMc00714 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase (PlsC) protein.
     
  0.800
Smed_2702
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: ret:RHE_PA00021 putative transcriptional regulator protein, AsnC/GntR family.
 
  
 0.797
Smed_2703
PFAM: carbohydrate kinase FGGY; KEGG: ret:RHE_PA00020 xylulokinase protein; Belongs to the FGGY kinase family.
 
   
 0.675
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.