STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2702Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: ret:RHE_PA00021 putative transcriptional regulator protein, AsnC/GntR family. (341 aa)    
Predicted Functional Partners:
Smed_2701
PFAM: 3-dehydroquinate synthase; KEGG: ret:RHE_PA00022 putative glycerol 1-phosphate dehydrogenase protein (L-arabinose utilization protein) protein.
 
  
 0.797
Smed_2261
Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: sme:SMc02690 hypothetical protein.
   
 
 0.762
Smed_2703
PFAM: carbohydrate kinase FGGY; KEGG: ret:RHE_PA00020 xylulokinase protein; Belongs to the FGGY kinase family.
 
  
 0.760
GlpD
PFAM: FAD dependent oxidoreductase; KEGG: rpa:RPA4410 glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.695
aqpZ
MIP family channel protein; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
  
 0.645
Smed_2149
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: sme:SMc01613 putative ribose 5-phosphate isomerase B protein.
 
  
 0.603
TpiA
PFAM: triosephosphate isomerase; KEGG: sme:SMc01614 triosephosphate isomerase.
 
  
 0.601
Smed_2700
TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; KEGG: ret:RHE_PA00023 putative hydrolase protein.
       0.564
Smed_3130
PFAM: carbohydrate kinase FGGY; KEGG: atc:AGR_C_3493 glycerol kinase.
  
  
 0.560
Smed_3248
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: sme:SMc02754 putative phosphocarrier HPR transmembrane protein.
  
  
 0.560
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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