STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2724PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: sme:SMc04046 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Smed_1840
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: sme:SMc04188 hypothetical protein.
  
     0.593
Smed_2725
PFAM: regulatory protein MarR; KEGG: rle:RL0596 putative MarR family transcriptional regulator.
       0.546
Smed_1024
TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sme:SMc01270 probable alcohol dehydrogenase class III + glutathione-dependent formaldehyde dehydrogenase protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.515
Smed_1953
PFAM: Glutathione S-transferase domain; KEGG: sme:SMc04321 putative glutathione S-transferase protein.
  
     0.477
Smed_3120
PFAM: Glutathione S-transferase domain; KEGG: sme:SMc03882 putative glutathione S-transferase protein.
 
     0.409
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.