STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_2934PFAM: GumN family protein; KEGG: sme:SMc02488 hypothetical protein. (363 aa)    
Predicted Functional Partners:
xerC
Phage integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.597
Smed_0947
PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMc01349 hypothetical protein.
  
     0.505
Smed_1535
PFAM: protein of unknown function DUF922; KEGG: sme:SMc00194 hypothetical protein.
  
     0.489
Smed_1451
Peptidase M15A; PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: sme:SMc00291 hypothetical lipoprotein.
  
     0.465
Smed_0307
KEGG: sme:SMc00767 hypothetical protein.
  
     0.421
Smed_0261
KEGG: sme:SMc03033 hypothetical protein.
    
 
 0.419
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.